The code hierarchy of MediCurator version 1 (before mid evaluation)

/medicurator/src/main/java/edu/emory/bmi/medicurator/
.
├── dupdetect     ----------------- Near-duplicate detection module
│   │
│   ├── DetectImage.java    ----- Detect duplicate image pairs
│   │
│   ├── DetectMetadata.java  ----- Detect near-duplicate metadata pairs
│   │
│   ├── DupDetect.java   --------- Entry of the detection module
│   │
│   ├── DuplicatePair.java  ------ Define the data type of duplicate pair
│   │
│   └── Verify.java    ---------- Check if a pair is really near-duplicate
│
│
├── general    -------------------- Define the abstract data structures
│   │
│   ├── DataSet.java  ------------ A DataSet may contains several Images
│   │                      and sub DataSets. Maintained as a tree.
│   │
│   ├── DataSource.java  --------- DataSource has a root DataSet
│   │
│   │
│   ├── Metadata.java  ----------- Metadata is a collection of key-value
│   │                      pairs Both of key and value are String.
│   │
│   ├── ReplicaSet.java  --------- ReplicaSet contains many Datasets. The
│   │                      DataSets might from different DataSource
│   │
│   └── User.java  --------------- User has username and password as well
│                          as several ReplicaSets.
│
├── image  ------------------------- Various image types
│   │
│   ├── DicomImage.java  --------- Implementation of DICOM image type.
│   │
│   └── Image.java  -------------- The abstraction of image, a image is
│                          consists of a Metadata and a byte[] of
│                          raw image data.
│
│
├── infinispan   ------------------- Contact with Infinispan
│   │
│   ├── ID.java  ----------------- Put and get various data with data id
│   │
│   ├── Manager.java  ------------ The global only DefaultCacheManager
│   │
│   └── StartInfinispan.java  ---- Just start a Infinispan node
│
│
├── storage   --------------------- Persist storage
│   │
│   ├── HdfsStorage.java   ------ (TODO)store to HDFS
│   │
│   ├── LocalStorage.java  ------ Store to local disk
│   │
│   └── Storage.java   ---------- Interface of storage, save and load
│
│
└── tcia   ------------------------ Implementation of TCIA data source
    │
    ├── TciaAPI.java  ----------- Implementation of TCIA RESTful API
    │
    ├── TciaDataSet.java  ------- DataSet
    │
    ├── TciaDataSource.java  ---- DataSource
    │
    ├── TciaHierarchy.java  ----- Five hierarchy of TCIA DataSet
    │  
    └── TciaQuery.java  --------- Generate and send request with HTTPS get